Login
Logged in as anonymous /
My BiBiServ
/
Logout
Search
?
Navigation
Tools
Alignment
AltAVist
ClustalW
dca
Dialign
E2G
JAli
OMA
PoSSuMsearch
PoSSuMsearch2
SWIFT Suit
Evolutionary Relationships
ConCysFind
Roci
ROCOCO
Rose
SplitsTree
Genome Comparison
AGenDA
AggloIndel
CEGeD
CG-CAT
DCJ
FFGC
Gecko
GEvolutionS
GraphTeams
MGA
newdist
REPuter
SBBI
TCRProfiler
Others
acdc
AGT-SDP
AIM
BPR
Decomp
Fly_Pres
Intronserter
jPREdictor
libfid
Metrans
mkESA
mmfind
MoRAine
Phase4
PREdictor
SciBrow
TALP
Trace2PS
Unwords
Wotd
XenDB
Primer Design
genefisher2
RNA
Shapes Studio
KnotInFrame
pAliKiss
pKiss
pknotsRG
RapidShapes
RNAalishapes
RNAshapes
aCMs
GUUGle
InSilicoDicer
Locomotif
paRNAss
planACstar
RNAforester
RNAhybrid
RNAsifter
Previous Results
Framework/Cloud
Education
Dynamic Programming
ADP
Sequence Analysis
SADR
Administration
BiBiServ policies
BiBiServ Team
Impressum
license
privacy policy
Statuscodes
RNAshapes
Welcome
Submission
WebService
Download
Manual
FAQ
References
Reset Session
Janssen, Stefan and Giegerich, Robert
The RNA shapes studio
, Bioinformatics, 2015
Giegerich, Robert and Voss, Bjoern and Rehmsmeier, Marc
Abstract Shapes of RNA
, Nucleic Acids Research, 2004
Lorenz, Ronny and Bernhart, Stephan H and Hoener zu Siederdissen, Christian and Tafer, Hakim and Flamm, Christoph and Stadler, Peter F and Hofacker, Ivo L
ViennaRNA Package 2.0
, Algorithms Molecular Biology, 2011
Gruber, Andreas R and Lorenz, Ronny and Bernhart, Stephan H and Neuboeck, Richard and Hofacker, Ivo L
The Vienna RNA Websuite
, Nucleic Acids Research, 2008
Mathews, David H. and Disney, Matthew D. and Childs, Jessica L. and Schroeder, Susan J. and Zuker, Michael and Turner, Douglas H.
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
, Proceedings of the National Academy of Sciences of the United States of America, 2004
Turner, Douglas H. and Mathews, David H.
NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure
, Nucleic Acids Research, 2010
Janssen, Stefan and Schudoma, Christian and Steger, Gerhard and Giegerich, Robert
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
, BMC Bioinformatics, 2011
Janssen, Stefan and Giegerich, Robert
Faster computation of exact RNA shape probabilities
, Bioinformatics, 2010
Voss, Bjoern and Giegerich, Robert and Rehmsmeier, Marc
Complete probabilistic analysis of RNA shapes
, BMC Biology, 2006
Reeder, Jens and Giegerich, Robert
Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction
, Bioinformatics, 2005
Steffen, Peter and Voss, Bjoern and Rehmsmeier, Marc and Reeder, Jens and Giegerich, Robert
RNAshapes: an integrated RNA analysis package based on abstract shapes
, Bioinformatics, 2006
McCaskill and S., John
The Equilibrium Partition Function and Base Pair Binding Probabilities for RNA Secondary Structure.
, Biopolymers, 1990
Weeks and M., Kevin
Advances in RNA Secondary and Tertiary Structure Analysis by Chemical Probing.
, Current Opinion in Structural Biology, 2010
Deigan, Katherine E. and Li, Tian W. and Mathews, David H. and Weeks, Kevin M.
Accurate SHAPE-directed RNA structure determination.
, Proceedings of the National Academy of Sciences, 2009
Saule, Cedric and Giegerich, Robert
Pareto optimization in algebraic dynamic programming.
, Algorithms for Molecular Biology, 2015
References
RapidShapes
Download
Impressum
ADP
Reset Session
RNAshapes
XenDB
Locomotif
SplitsTree
Previous Results
mmfind
TCRProfiler
BiBiServ Team
Wotd
Intronserter
dca
JAli
REPuter
ConCysFind
mkESA
WebService
OMA
Bellman's GAP Cafe
RNAhybrid
SciBrow
RNAsifter
GUUGle
WebService Linklist
AltAVist
InSilicoDicer
E2G
Submission
Roci
PREdictor
FAQ
BPR
RITC
Manual
PoSSuMsearch
Rose
RNAshapes
AGT-SDP
GEvolutionS
RNAforester
CG-CAT
WebService
Metrans
DCJ
pKiss
SBBI
Statuscodes
Dialign
RNAalishapes
jPREdictor
MGA
acdc
genefisher2
GraphTeams
ROCOCO
privacy policy
TALP
Gecko
BiBiServ policies
Fly_Pres
FAQ
Trace2PS
pknotsRG
CEGeD
newdist
pAliKiss
AggloIndel
References
license
Phase4
libfid
AGenDA
Decomp
aCMs
Download
MoRAine
Unwords
Submission
Reset Session
planACstar
Manual
SWIFT Suit
SADR
RITC
AIM
References
PoSSuMsearch2
ClustalW
RNAshapes
FFGC
KnotInFrame
paRNAss