Login
Logged in as anonymous /
My BiBiServ
/
Logout
Search
?
Navigation
Tools
Alignment
AltAVist
ClustalW
dca
Dialign
E2G
JAli
OMA
PoSSuMsearch
PoSSuMsearch2
SWIFT Suit
Evolutionary Relationships
ConCysFind
Roci
ROCOCO
Rose
SplitsTree
Genome Comparison
AGenDA
AggloIndel
CEGeD
CG-CAT
DCJ
FFGC
Gecko
GEvolutionS
GraphTeams
MGA
newdist
REPuter
SBBI
TCRProfiler
Others
acdc
AGT-SDP
AIM
BPR
Decomp
Fly_Pres
Intronserter
jPREdictor
libfid
Metrans
mkESA
mmfind
MoRAine
Phase4
PREdictor
SciBrow
TALP
Trace2PS
Unwords
Wotd
XenDB
Primer Design
genefisher2
RNA
Shapes Studio
KnotInFrame
pAliKiss
pKiss
pknotsRG
RapidShapes
RNAalishapes
RNAshapes
aCMs
GUUGle
InSilicoDicer
Locomotif
paRNAss
planACstar
RNAforester
RNAhybrid
RNAsifter
Previous Results
Framework/Cloud
Education
Dynamic Programming
ADP
Sequence Analysis
SADR
Administration
BiBiServ policies
BiBiServ Team
Impressum
license
privacy policy
Statuscodes
RNAshapes
Welcome
Submission
WebService
Download
Manual
FAQ
References
Reset Session
Janssen, Stefan and Giegerich, Robert
The RNA shapes studio
, Bioinformatics, 2015
Giegerich, Robert and Voss, Bjoern and Rehmsmeier, Marc
Abstract Shapes of RNA
, Nucleic Acids Research, 2004
Lorenz, Ronny and Bernhart, Stephan H and Hoener zu Siederdissen, Christian and Tafer, Hakim and Flamm, Christoph and Stadler, Peter F and Hofacker, Ivo L
ViennaRNA Package 2.0
, Algorithms Molecular Biology, 2011
Gruber, Andreas R and Lorenz, Ronny and Bernhart, Stephan H and Neuboeck, Richard and Hofacker, Ivo L
The Vienna RNA Websuite
, Nucleic Acids Research, 2008
Mathews, David H. and Disney, Matthew D. and Childs, Jessica L. and Schroeder, Susan J. and Zuker, Michael and Turner, Douglas H.
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
, Proceedings of the National Academy of Sciences of the United States of America, 2004
Turner, Douglas H. and Mathews, David H.
NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure
, Nucleic Acids Research, 2010
Janssen, Stefan and Schudoma, Christian and Steger, Gerhard and Giegerich, Robert
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
, BMC Bioinformatics, 2011
Janssen, Stefan and Giegerich, Robert
Faster computation of exact RNA shape probabilities
, Bioinformatics, 2010
Voss, Bjoern and Giegerich, Robert and Rehmsmeier, Marc
Complete probabilistic analysis of RNA shapes
, BMC Biology, 2006
Reeder, Jens and Giegerich, Robert
Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction
, Bioinformatics, 2005
Steffen, Peter and Voss, Bjoern and Rehmsmeier, Marc and Reeder, Jens and Giegerich, Robert
RNAshapes: an integrated RNA analysis package based on abstract shapes
, Bioinformatics, 2006
McCaskill and S., John
The Equilibrium Partition Function and Base Pair Binding Probabilities for RNA Secondary Structure.
, Biopolymers, 1990
Weeks and M., Kevin
Advances in RNA Secondary and Tertiary Structure Analysis by Chemical Probing.
, Current Opinion in Structural Biology, 2010
Deigan, Katherine E. and Li, Tian W. and Mathews, David H. and Weeks, Kevin M.
Accurate SHAPE-directed RNA structure determination.
, Proceedings of the National Academy of Sciences, 2009
Saule, Cedric and Giegerich, Robert
Pareto optimization in algebraic dynamic programming.
, Algorithms for Molecular Biology, 2015
TALP
References
Statuscodes
RapidShapes
ConCysFind
Manual
AltAVist
Submission
Roci
mkESA
KnotInFrame
pAliKiss
GEvolutionS
RNAshapes
Bellman's GAP Cafe
REPuter
WebService
AIM
GraphTeams
license
PoSSuMsearch2
Download
newdist
RNAforester
Rose
XenDB
Fly_Pres
MoRAine
Download
InSilicoDicer
BiBiServ policies
Reset Session
FAQ
Previous Results
RNAhybrid
planACstar
acdc
RNAshapes
jPREdictor
FAQ
References
SADR
Locomotif
SplitsTree
FFGC
mmfind
BPR
BiBiServ Team
Manual
GUUGle
aCMs
Unwords
SciBrow
WebService Linklist
RNAalishapes
References
pKiss
Intronserter
Gecko
CEGeD
RITC
SBBI
AggloIndel
PREdictor
pknotsRG
CG-CAT
RNAsifter
RITC
ClustalW
Impressum
privacy policy
WebService
Submission
Wotd
AGenDA
dca
Dialign
E2G
TCRProfiler
MGA
genefisher2
DCJ
SWIFT Suit
libfid
Reset Session
paRNAss
ROCOCO
ADP
JAli
Phase4
Metrans
PoSSuMsearch
OMA
RNAshapes
AGT-SDP
Decomp
Trace2PS