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Author: T. Rosleff Soerensen

The program mmfind evaluates an alignment in multiple FASTA format for mismatches. Quality scores are considered if a file with scores is supplied. Several options for filtering are available. The detected mismatches are tested for 3 meaningful qualities.

mmfind is a commandline tool written in Python. It is tested with Python 2.6, 2.7 and 3.1.

Users of mmfind are requested to cite :
Holtgraewe, Daniela and Rosleff Soerensen, Thomas and Viehoever, Prisca and Schneider, Jessica and Schulz, Britta and Borchardt, Dietrich and Kraft, Thomas and Himmelbauer, Heinz and Weisshaar, Bernd Reliable In Silico Identification of Sequence Polymorphisms and Their Application for Extending the Genetic Map of Sugar Beet (Beta vulgaris), PloS one, 2014
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