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Janssen, Stefan and Giegerich, Robert The RNA shapes studio, Bioinformatics, 2015
Theis, Corinna and Reeders, Jens and Giegerich, Robert KnotInFrame: prediction of -1 ribosomal frameshift events, Nucleic Acids Research, 2008
Hofacker, Ivo L. and Fontana, Walter and Stadler, Peter F. and Bonhoeffer, Sebastian and Tacker, Manfred and Schuster, Peter Fast Folding and Comparison of RNA Secondary Structures., Monatshefte fuer Chemie 125: 167-188 , 1994
Alam, S.L. and Atkins, J.F. and Gesteland, R.F. Programmed ribosomal frameshifting: Much ado about knotting, PNAS, 1999
Reeder, Jens and Giegerich, Robert Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics., BMC, 2004
Mathews, David H. and Disney, Matthew D. and Childs, Jessica L. and Schroeder, Susan J. and Zuker, Michael and Turner, Douglas H. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure, Proceedings of the National Academy of Sciences of the United States of America, 2004
Turner, Douglas H. and Mathews, David H. NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure, Nucleic Acids Research, 2010
Jacobs, Jonathan L. and Belew, Ashton T. and Rakauskaite, Rasa and Dinman, Jonathan D. Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae, Nucleic Acids Research, 2007