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ConCysFind is a commandline tool written in Java and need at least Java (8 or newer)
and blastp (2.7 or newer) to run.
A typically commandline call looks like :
java -jar ConCysFind.jar <option1> <option2>...
There is no predetermined order for input and parameter options.
The database contains protein sequences from 21 plant species, covering a wide
evolutionary distance of the plant kingdom. A executable blastp file has to be
present in the ConCysFind folder (environment) a database has to be built to use
ConCysFind:
makeblastdb -in <FASTA FILE> -dbtype prot
To build a custom database, summarize the UniProt protein IDs in a FASTA file.
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