Alignment-tools

AltAVist - AltAVist : Alternative Alignment Visualization Tool

ClustalW - general purpose multiple sequence alignment program for DNA or proteins

dca - Divide-and-Conquer Multiple Sequence Alignment (DCA) is a program for producing fast, high quality simultaneous multiple sequence alignments of amino acid, RNA, or DNA sequences.

Dialign - DIALIGN is a multiple alignment program based on segment-to-segment comparison.

E2G - E2G - Efficiently Mapping large EST and cDNA sets to Genomic Sequences.

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