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1 <?xml version="1.0" encoding="UTF-8"?>
2 <sequenceCollection xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
3 xmlns="de:unibi:techfak:bibiserv:sadr:seqcol"
4 xmlns:dna="de:unibi:techfak:bibiserv:sadr:dna"
5 xmlns:rna="de:unibi:techfak:bibiserv:sadr:rna"
6 xsi:schemaLocation="de:unibi:techfak:bibiserv:sadr:seqcol
http://bibiserv.techfak.uni-bielefeld.de/sadr/webservices/
examples/seqcollection.xsd
7 de:unibi:techfak:bibiserv:sadr:dna
http://bibiserv.techfak.uni-bielefeld.de/sadr/webservices/
examples/dnaSequence.xsd
8 de:unibi:techfak:bibiserv:sadr:rna
http://bibiserv.techfak.uni-bielefeld.de/sadr/webservices/
examples/rnaSequence.xsd">
9 <dna:fasta dna:seqID="DNA12345">
10 <dna:name>smalldemodnaseq</dna:name>
11 <dna:description>A small DNA Sequence</dna:description>
12 <dna:sequence>ACGT</dna:sequence>
13 </dna:fasta>
14 <rna:fasta rna:seqID="RNA54321">
15 <rna:name>smalldemornaseq</rna:name>
16 <rna:description>A small RNA Sequence</rna:description>
17 <rna:sequence>ACGU</rna:sequence>
18 </rna:fasta>
19 </sequenceCollection>
An example document containing elements from different namespaces and grammars.
- line 3-5: three namespaces are defined. One for the whole document, one for a DNA sequence and one for a RNA sequence
- line 6-8: a schema location (where to find the grammar) is assigned to every namespace
- line 9-13: a DNA sequence (namespace name: dna) is defined
- line 14-18: a RNA sequence (namespace name: rna) is defined
1 <?xml version="1.0" encoding="UTF-8"?>
2 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
3 xmlns="de:unibi:techfak:bibiserv:sadr:dna"
4 targetNamespace="de:unibi:techfak:bibiserv:sadr:dna">
5 <!-- -->
6 <!-- ELEMENTS -->
7 <!-- -->
8 <xs:element name="fasta" type="fastaType" nillable="true"/>
9 <!-- -->
10 <!-- TYPES -->
11 <!-- -->
12 <xs:complexType name="fastaType">
13 <xs:sequence>
14 <xs:element name="name" type="xs:string" minOccurs="0"/>
15 <xs:element name="description" type="xs:string" minOccurs="0"/>
16 <xs:element name="sequence">
17 <xs:simpleType>
18 <xs:restriction base="xs:string">
19 <xs:whiteSpace value="replace"/>
20 <xs:pattern value="[ACGT]{0,}"/>
21 </xs:restriction>
22 </xs:simpleType>
23 </xs:element>
24 </xs:sequence>
25 <xs:attribute name="seqID" type="xs:string" use="required"/>
26 </xs:complexType>
27 </xs:schema>
Grammar of the DNA sequence.
- line 2-4: A schema definition is opened, namespace is set and the target namespace is defined.
- line 8: The only element is defined, which is of type dnaSequenceType
- line 12-26: Definition of the Element.
- line 20: Only the letters A,C,G,T are allowed within the DNA sequence
1 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
2 xmlns="de:unibi:techfak:bibiserv:sadr:rna"
3 targetNamespace="de:unibi:techfak:bibiserv:sadr:rna">
[...]
15 <xs:element name="sequence">
16 <xs:simpleType>
17 <xs:restriction base="xs:string">
18 <xs:whiteSpace value="replace"/>
19 <xs:pattern value="[ACGU]{0,}"/>
20 </xs:restriction>
21 </xs:simpleType>
22 </xs:element>
[...]
Difference between the RNA sequence and the DNA sequence definition.
- line 1-3: Another namespace is defined
- line 19: allowed letters for rna sequence are A,C,G,U (not T)
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