Literature
Methodology
  • P. Steffen and R. Giegerich.
    Versatile and declarative programming using pair algebras. BMC Bioinformatics, Vol 6, Number 224, 2005
  • R. Giegerich, C. Meyer and P. Steffen.
    A Discipline of Dynamic Programming over Sequence Data.
    Science of Computer Programming, Vol 51, 3:215-263, 2004
  • R. Giegerich.
    A Systematic Approach to Dynamic Programming. Bioinformatics, 16:665-667, 2000
  • R. Giegerich.
    Explaining and Controlling Ambiguity in Dynamic Programming. Proc. Combinatorial Pattern Matching (CMP), pages 46-59, Springer LNCS 1848, 2000
Applications:
  • Janina Reeder, Peter Steffen, and Robert Giegerich.
    Effective ambiguity checking in biosequence analysis. BMC Bioinformatics, Vol. 6, Number 153, 2005
  • Jens Reeder and Robert Giegerich.
    Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. BMC Bioinformatics, 5:104, 2004
  • M. Rehmsmeier, P. Steffen, M. Höchstmann and R. Giegerich.
    Fast and effective prediction of micro{RNA}/target duplexes. RNA, 10:1507-1517, 2004
  • R. Giegerich, B. Voss and M. Rehmsmeier.
    Abstract Shapes of RNA. Nucleic Acids Research (NAR), Vol. 32, 16:4843-4851, 2004
  • C. Meyer and R. Giegerich.
    Matching and Significance Evaluation of Combined Sequence-Structure Motifs in RNA. Z.Phys.Chem., 216:193-216, 2002
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