Before the first genome name you can write anything. Genome input format: >Genome-name1 gla -tt1 hem -m/yc ) //comment alb b -a can ) >Genome name 2 //one line can contain many chromosomes gla -tt1 | hem alb can a -b m/yc ) //the leading spaces of the genome name will be cut off > Genome name 3 //here comes a linear chromosome //it is no problem to use several lines for one chromosome gla a -b m/yc -tt1 hem | //here comes a cyclic chromosome alb can ) //this would be an accepted file